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"Title": "An Interface Between the 'FSKX' Standard and 'R'",
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"source": "https://cranlogs.r-pkg.org/downloads/total/last-month/FSK2R"
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"_exports": [
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"create_fsk",
"export_fsk",
"FSK_runner",
"FSKAuthor",
"FSKCreator",
"FSKDataBackground",
"FSKGeneralInformation",
"FSKMetadata",
"FSKModelCategory",
"FSKModelMath",
"FSKParameter",
"FSKReference",
"FSKScope",
"get_background",
"get_general_info",
"get_modelmath",
"get_readme",
"get_scope",
"get_simulations",
"import_fsk",
"is_fsk_with_r",
"is.FSK2R",
"n_simuls_fsk",
"read_fsk_json_metadata",
"read_fsk_manifest",
"read_fsk_metadata_excel",
"read_fsk_model",
"read_fsk_packages",
"read_fsk_rdf_metadata",
"read_fsk_readme",
"read_fsk_sim",
"read_other_files",
"read_R_model",
"read_visualization",
"run_all_simulations",
"run_simulation",
"set_new_simulation",
"set_readme"
],
"_help": [
{
"page": "check_manifest_files",
"title": "Checks that the files defined in the manifest exist",
"topics": [
"check_manifest_files"
]
},
{
"page": "clean_empty_values",
"title": "Recursively clean object by removing empty values",
"topics": [
"clean_empty_values"
]
},
{
"page": "clean_json_string",
"title": "Clean empty values from JSON string",
"topics": [
"clean_json_string"
]
},
{
"page": "convert_metadata_to_lists",
"title": "Fix the metadat so that it is lists",
"topics": [
"convert_metadata_to_lists"
]
},
{
"page": "create_fsk",
"title": "Creates an FSK model from an existing R script",
"topics": [
"create_fsk"
]
},
{
"page": "dataframe_to_list",
"title": "Converts a dataframe to a list",
"topics": [
"dataframe_to_list"
]
},
{
"page": "export_fsk",
"title": "Exports an object of FSK class as an .fskx file",
"topics": [
"export_fsk"
]
},
{
"page": "export_manifest",
"title": "Functions for exporting the manifest of an FSK2R object",
"topics": [
"export_manifest"
]
},
{
"page": "export_metadata",
"title": "Function for exporting the metadata of an FSK2R object",
"topics": [
"export_metadata"
]
},
{
"page": "export_modelmetadata",
"title": "Functions for exporting the model metadata of an FSK2R object",
"topics": [
"export_modelmetadata"
]
},
{
"page": "export_otherfiles",
"title": "Export other files",
"topics": [
"export_otherfiles"
]
},
{
"page": "export_packages",
"title": "Functions for exporting the packages of an FSK2R object",
"topics": [
"export_packages"
]
},
{
"page": "export_R_model",
"title": "Functions for exporting the R model of an FSK2R object",
"topics": [
"export_R_model"
]
},
{
"page": "export_readme",
"title": "Functions for exporting the README of an FSK2R object",
"topics": [
"export_readme"
]
},
{
"page": "export_sbmlModel",
"title": "Export the model.sbml",
"topics": [
"export_sbmlModel"
]
},
{
"page": "export_simulation",
"title": "Export the sim.sedml",
"topics": [
"export_simulation"
]
},
{
"page": "export_visualization",
"title": "Functions for exporting the visualization script of an FSK2R object",
"topics": [
"export_visualization"
]
},
{
"page": "export_workspace",
"title": "Functions for exporting the workspace of an FSK2R object",
"topics": [
"export_workspace"
]
},
{
"page": "extract_script_filenames_from_rdf",
"title": "Extract script filenames from RDF metadata",
"topics": [
"extract_script_filenames_from_rdf"
]
},
{
"page": "find_packages",
"title": "Finds where packages are stored",
"topics": [
"find_packages"
]
},
{
"page": "FSK_runner",
"title": "Startup FSK runner",
"topics": [
"FSK_runner"
]
},
{
"page": "FSKAuthor",
"title": "Author Information",
"topics": [
"FSKAuthor",
"FSKCreator"
]
},
{
"page": "FSKDataBackground",
"title": "Data Background Section",
"topics": [
"FSKDataBackground"
]
},
{
"page": "FSKGeneralInformation",
"title": "General Information Section",
"topics": [
"FSKGeneralInformation"
]
},
{
"page": "FSKMetadata",
"title": "FSK Metadata Classes",
"topics": [
"FSKMetadata"
]
},
{
"page": "FSKModelCategory",
"title": "Model Category Information",
"topics": [
"FSKModelCategory"
]
},
{
"page": "FSKModelMath",
"title": "Model Math Section",
"topics": [
"FSKModelMath"
]
},
{
"page": "FSKParameter",
"title": "Parameter Information",
"topics": [
"FSKParameter"
]
},
{
"page": "FSKReference",
"title": "Reference Information",
"topics": [
"FSKReference"
]
},
{
"page": "FSKScope",
"title": "Scope Section",
"topics": [
"FSKScope"
]
},
{
"page": "get_background",
"title": "Returns the background of an FSK object",
"topics": [
"get_background"
]
},
{
"page": "get_general_info",
"title": "Returns the general info of an FSK object",
"topics": [
"get_general_info"
]
},
{
"page": "get_modelmath",
"title": "Returns the model math of an FSK object",
"topics": [
"get_modelmath"
]
},
{
"page": "get_readme",
"title": "Readme of an FSK object",
"topics": [
"get_readme"
]
},
{
"page": "get_scope",
"title": "Returns the scope of an FSK object",
"topics": [
"get_scope"
]
},
{
"page": "get_session_info",
"title": "Extract session information",
"topics": [
"get_session_info"
]
},
{
"page": "get_simulations",
"title": "Returns a summary of the simulations of an FSK object",
"topics": [
"get_simulations"
]
},
{
"page": "import_fsk",
"title": "Import an FSK model into R",
"topics": [
"import_fsk"
]
},
{
"page": "import_fsk_join",
"title": "Import of FSK with join node",
"topics": [
"import_fsk_join"
]
},
{
"page": "is_fsk_with_r",
"title": "Does the object have an R model?",
"topics": [
"is_fsk_with_r"
]
},
{
"page": "is.FSK2R",
"title": "Is it an instance of FSK2R?",
"topics": [
"is.FSK2R"
]
},
{
"page": "map_FSK_metadata",
"title": "Map for the contents of the metadata",
"topics": [
"map_FSK_metadata"
]
},
{
"page": "map_metadata_xml_template",
"title": "Map between the names used in the template and the xml",
"topics": [
"map_metadata_xml_template"
]
},
{
"page": "metadata_list_to_fsk",
"title": "From read_fsk_metadata_XX to FSK2R format",
"topics": [
"metadata_list_to_fsk"
]
},
{
"page": "n_simuls_fsk",
"title": "Number of simulations in the FSK2R object",
"topics": [
"n_simuls_fsk"
]
},
{
"page": "read_fsk_json_metadata",
"title": "Read the metadata.json file",
"topics": [
"read_fsk_json_metadata"
]
},
{
"page": "read_fsk_manifest",
"title": "Read the manifest of an FSK file and convert it to a data.frame",
"topics": [
"read_fsk_manifest"
]
},
{
"page": "read_fsk_metadata_excel",
"title": "FSK metadata from local Excel file",
"topics": [
"read_fsk_metadata_excel"
]
},
{
"page": "read_fsk_model",
"title": "Read the model.sbml",
"topics": [
"read_fsk_model"
]
},
{
"page": "read_fsk_packages",
"title": "Read the packages.json",
"topics": [
"read_fsk_packages"
]
},
{
"page": "read_fsk_rdf_metadata",
"title": "Read the metadata.rdf",
"topics": [
"read_fsk_rdf_metadata"
]
},
{
"page": "read_fsk_readme",
"title": "Read the README file",
"topics": [
"read_fsk_readme"
]
},
{
"page": "read_fsk_sim",
"title": "Read the sim.sedml file",
"topics": [
"read_fsk_sim"
]
},
{
"page": "read_other_files",
"title": "Read \"other files\"",
"topics": [
"read_other_files"
]
},
{
"page": "read_R_model",
"title": "Reads the R model in an FSK model",
"topics": [
"read_R_model"
]
},
{
"page": "read_visualization",
"title": "Reads the visualization script in an FSK model",
"topics": [
"read_visualization"
]
},
{
"page": "run_all_simulations",
"title": "Run every simulation in an FSK object",
"topics": [
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]
},
{
"page": "run_simulation",
"title": "Run one simulation in an FSK object",
"topics": [
"run_simulation"
]
},
{
"page": "set_new_simulation",
"title": "Define a new simulation in an FSK2R object",
"topics": [
"set_new_simulation"
]
},
{
"page": "set_readme",
"title": "Readme of an FSK object",
"topics": [
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]
},
{
"page": "update_manifest",
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]
}
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"title": "FSK2R: an interface between FSK-ML and R",
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"engine": "knitr::rmarkdown",
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"Importing an FSK file",
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"Running and editting simulations in the FSK file",
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"created": "2020-05-13 14:00:02",
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