Package: FSK2R 0.2.0

FSK2R: An Interface Between the 'FSKX' Standard and 'R'

Functions for importing, creating, editing and exporting 'FSK' files <https://foodrisklabs.bfr.bund.de/fskx-food-safety-knowledge-exchange-format/> using the 'R' programming environment. Furthermore, it enables users to run simulations contained in the 'FSK' files and visualize the results.

Authors:Alberto Garre [aut, cre], Miguel de Alba Aparicio [aut], Thomas Schueler [aut], Pablo S. Fernandez [aut], Matthias Filter [aut]

FSK2R_0.2.0.tar.gz
FSK2R_0.2.0.zip(r-4.7)FSK2R_0.2.0.zip(r-4.6)FSK2R_0.2.0.zip(r-4.5)
FSK2R_0.2.0.tgz(r-4.6-any)FSK2R_0.2.0.tgz(r-4.5-any)
FSK2R_0.2.0.tar.gz(r-4.7-any)FSK2R_0.2.0.tar.gz(r-4.6-any)
FSK2R_0.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
FSK2R/json (API)

# Install 'FSK2R' in R:

install.packages('FSK2R', repos = c('https://albgarre.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.70 score 8 scripts 220 downloads 39 exports 75 dependencies

Last updated from:e2ff9a40b9. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	153
source / vignettes	OK	223
linux-release-x86_64	OK	158
macos-release-arm64	OK	182
macos-oldrel-arm64	OK	301
windows-devel	OK	107
windows-release	OK	115
windows-oldrel	OK	199
wasm-release	OK	138

Exports:clean_empty_values create_fsk export_fsk FSK_runner FSKAuthor FSKCreator FSKDataBackground FSKGeneralInformation FSKMetadata FSKModelCategory FSKModelMath FSKParameter FSKReference FSKScope get_background get_general_info get_modelmath get_readme get_scope get_simulations import_fsk is_fsk_with_r is.FSK2R n_simuls_fsk read_fsk_json_metadata read_fsk_manifest read_fsk_metadata_excel read_fsk_model read_fsk_packages read_fsk_rdf_metadata read_fsk_readme read_fsk_sim read_other_files read_R_model read_visualization run_all_simulations run_simulation set_new_simulation set_readme

Dependencies:antiword askpass base64enc bitops bslib cachem cellranger cli commonmark cpp11 crayon curl data.table digest dplyr fastmap fontawesome fs generics glue hms htmltools httpuv httr jquerylib jsonlite later lifecycle magrittr memoise mime minty ndjson openssl otel pdftools pillar pkgconfig prettyunits progress promises purrr qpdf R.methodsS3 R.oo R.utils R6 rappdirs Rcpp RCurl readODS readtext readxl rematch rjson rlang sass shiny sourcetools streamR stringi stringr striprtf sys tibble tidyr tidyselect tzdb utf8 vctrs withr XML xml2 xtable zip

FSK2R: an interface between FSK-ML and R

Rendered frombasic_FSK2R.Rmdusingknitr::rmarkdown

Last update: 2025-10-10
Started: 2020-05-13

Citation

Readme and manuals

Help Manual

Help page	Topics
Checks that the files defined in the manifest exist	check_manifest_files
Recursively clean object by removing empty values	clean_empty_values
Clean empty values from JSON string	clean_json_string
Fix the metadat so that it is lists	convert_metadata_to_lists
Creates an FSK model from an existing R script	create_fsk
Converts a dataframe to a list	dataframe_to_list
Exports an object of FSK class as an .fskx file	export_fsk
Functions for exporting the manifest of an FSK2R object	export_manifest
Function for exporting the metadata of an FSK2R object	export_metadata
Functions for exporting the model metadata of an FSK2R object	export_modelmetadata
Export other files	export_otherfiles
Functions for exporting the packages of an FSK2R object	export_packages
Functions for exporting the R model of an FSK2R object	export_R_model
Functions for exporting the README of an FSK2R object	export_readme
Export the model.sbml	export_sbmlModel
Export the sim.sedml	export_simulation
Functions for exporting the visualization script of an FSK2R object	export_visualization
Functions for exporting the workspace of an FSK2R object	export_workspace
Extract script filenames from RDF metadata	extract_script_filenames_from_rdf
Finds where packages are stored	find_packages
Startup FSK runner	FSK_runner
Author Information	FSKAuthor FSKCreator
Data Background Section	FSKDataBackground
General Information Section	FSKGeneralInformation
FSK Metadata Classes	FSKMetadata
Model Category Information	FSKModelCategory
Model Math Section	FSKModelMath
Parameter Information	FSKParameter
Reference Information	FSKReference
Scope Section	FSKScope
Returns the background of an FSK object	get_background
Returns the general info of an FSK object	get_general_info
Returns the model math of an FSK object	get_modelmath
Readme of an FSK object	get_readme
Returns the scope of an FSK object	get_scope
Extract session information	get_session_info
Returns a summary of the simulations of an FSK object	get_simulations
Import an FSK model into R	import_fsk
Import of FSK with join node	import_fsk_join
Does the object have an R model?	is_fsk_with_r
Is it an instance of FSK2R?	is.FSK2R
Map for the contents of the metadata	map_FSK_metadata
Map between the names used in the template and the xml	map_metadata_xml_template
From read_fsk_metadata_XX to FSK2R format	metadata_list_to_fsk
Number of simulations in the FSK2R object	n_simuls_fsk
Read the metadata.json file	read_fsk_json_metadata
Read the manifest of an FSK file and convert it to a data.frame	read_fsk_manifest
FSK metadata from local Excel file	read_fsk_metadata_excel
Read the model.sbml	read_fsk_model
Read the packages.json	read_fsk_packages
Read the metadata.rdf	read_fsk_rdf_metadata
Read the README file	read_fsk_readme
Read the sim.sedml file	read_fsk_sim
Read "other files"	read_other_files
Reads the R model in an FSK model	read_R_model
Reads the visualization script in an FSK model	read_visualization
Run every simulation in an FSK object	run_all_simulations
Run one simulation in an FSK object	run_simulation
Define a new simulation in an FSK2R object	set_new_simulation
Readme of an FSK object	set_readme
Updates the manifest file	update_manifest

Package: FSK2R 0.2.0

FSK2R: An Interface Between the 'FSKX' Standard and 'R'

Citation

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)